Portable Microhaplotype Object (PMO)
  • Home
  • Format Info
    • Development of Format
    • PMO fields overview
    • PMO Examples
    • Format Overview For Developers
  • Tools Installation
    • pmotools-python installation
  • pmotools-python usages
    • Command line interface

    • pmotools-runner.py
    • Command line interface to pmotools-python with pmotools-runner.py
    • Extracting out of PMO
    • Extracting allele tables using pmotools-python
    • Subset PMO
    • Subsetting from a PMO using pmotools-python
    • Getting sub info from PMO
    • Getting basic info out of PMO using pmotools-python
    • Getting panel info out of PMO using pmotools-python
    • Handling Multiple PMOs
    • Handling multiple PMOs pmotools-python

    • Python interface
    • Getting basic info out of a PMO
    • Creating a PMO File
  • Resources
    • References

References

Crystal-Ornelas, Robert, Charuleka Varadharajan, Dylan O’Ryan, Kathleen Beilsmith, Benjamin Bond-Lamberty, Kristin Boye, Madison Burrus, et al. 2022. “Enabling FAIR Data in Earth and Environmental Science with Community-Centric (Meta)data Reporting Formats.” Sci Data 9 (1): 700.
Oldoni, Fabio, Kenneth K Kidd, and Daniele Podini. 2019. “Microhaplotypes in Forensic Genetics.” Forensic Sci. Int. Genet. 38 (January): 54–69.
“SRA Metadata and Submission Overview.” n.d. https://www.ncbi.nlm.nih.gov/sra/docs/submitmeta/.
Tessema, Sofonias K, Nicholas J Hathaway, Noam B Teyssier, Maxwell Murphy, Anna Chen, Ozkan Aydemir, Elias M Duarte, et al. 2022. “Sensitive, Highly Multiplexed Sequencing of Microhaplotypes from the Plasmodium Falciparum Heterozygome.” J. Infect. Dis. 225 (April): 1227–37.
Vangay Pajau, Burgin Josephine, Johnston Anjanette, Beck Kristen L., Berrios Daniel C., Blumberg Kai, Canon Shane, et al. 2021. “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities.” mSystems 6 (1): e01194–20.
Weisenhorn, Pamela, and Kathleen Beilsmith. 2022. “ESS-DIVE Reporting Format for Amplicon Abundance Table.” Environmental System Science Data Infrastructure for a Virtual Ecosystem; Environmental Systems Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE).
Yilmaz, Pelin, Renzo Kottmann, Dawn Field, Rob Knight, James R Cole, Linda Amaral-Zettler, Jack A Gilbert, et al. 2011. “Minimum Information about a Marker Gene Sequence (MIMARKS) and Minimum Information about Any (x) Sequence (MIxS) Specifications.” Nat. Biotechnol. 29 (5): 415–20.
Source Code
---
title: References
nocite: |
  @*
---

```{r setup, echo=FALSE, message=FALSE}
source("common.R")
```



::: {#refs}

:::