Slot: fastqs_loc

the location (url or filename path) of the fastqs for a library run

URI: portable_microhaplotype_object:fastqs_loc Alias: fastqs_loc

Applicable Classes

Name	Description	Modifies Slot
LibrarySampleInfo	Information about a specific amplification and sequencing of a specimen	no

Properties

• Range: String

• Regex pattern: ^[A-z-.;,_0-9\(\),\/\ ]+$

Examples

Value
ftp.sra.ebi.ac.uk/vol1/fastq/SRR332/035/SRR33216235/SRR33216235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR332/035/SRR33216235/SRR33216235_2.fastq.gz
MACHINE@/path/to/SRR33216235_1.fastq.gz;MACHINE@/path/to/SRR33216235_2.fastq.gz

Identifier and Mapping Information

Schema Source

• from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type	Mapped Value
self	portable_microhaplotype_object:fastqs_loc
native	portable_microhaplotype_object:fastqs_loc

LinkML Source

name: fastqs_loc
description: the location (url or filename path) of the fastqs for a library run
examples:
- value: ftp.sra.ebi.ac.uk/vol1/fastq/SRR332/035/SRR33216235/SRR33216235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR332/035/SRR33216235/SRR33216235_2.fastq.gz
- value: MACHINE@/path/to/SRR33216235_1.fastq.gz;MACHINE@/path/to/SRR33216235_2.fastq.gz
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
rank: 1000
alias: fastqs_loc
owner: LibrarySampleInfo
domain_of:
- LibrarySampleInfo
range: string
required: false
pattern: ^[A-z-.;,_0-9\(\),\/\ ]+$