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Class: SpecimenInfo

Information on specimen info

URI: portable_microhaplotype_object:SpecimenInfo

classDiagram class SpecimenInfo click SpecimenInfo href "../SpecimenInfo" SpecimenInfo : alternate_identifiers SpecimenInfo : collection_country SpecimenInfo : collection_date SpecimenInfo : collector_chief_scientist SpecimenInfo : drug_usage SpecimenInfo : env_broad_scale SpecimenInfo : env_local_scale SpecimenInfo : env_medium SpecimenInfo : geo_admin1 SpecimenInfo : geo_admin2 SpecimenInfo : geo_admin3 SpecimenInfo : host_age SpecimenInfo : host_sex SpecimenInfo : host_subject_id SpecimenInfo : host_taxon_id SpecimenInfo : lat_lon SpecimenInfo : parasite_density_info SpecimenInfo --> "*" ParasiteDensity : parasite_density_info click ParasiteDensity href "../ParasiteDensity" SpecimenInfo : plate_info SpecimenInfo --> "0..1" PlateInfo : plate_info click PlateInfo href "../PlateInfo" SpecimenInfo : project_name SpecimenInfo : specimen_collect_device SpecimenInfo : specimen_comments SpecimenInfo : specimen_name SpecimenInfo : specimen_store_loc SpecimenInfo : specimen_taxon_id SpecimenInfo : specimen_type SpecimenInfo : travel_out_six_month

Slots

Name Cardinality and Range Description Inheritance
specimen_name 1
String		 an identifier for the specimen, should be unique within this sample set direct
specimen_taxon_id 1..*
Integer		 the NCBI taxonomy number of the organism in specimen, can list multiple if a ... direct
host_subject_id 0..1
Integer		 an identifier for the individual a specimen was collected from direct
host_taxon_id 1
Integer		 the NCBI taxonomy number of the host that the specimen was collected from direct
alternate_identifiers *
String		 a list of optional alternative names for the specimens direct
host_sex 0..1
String		 if specimen is from a person, the sex listed for that person direct
parasite_density_info *
ParasiteDensity		 one or more parasite densities in microliters for this specimen direct
collection_date 1
String		 the date of the specimen collection, can be YYYY, YYYY-MM, or YYYY-MM-DD direct
host_age 0..1
Double		 if specimen is from a person, the age in years of the person, can be float va... direct
collection_country 1
String		 the name of country collected in, would be the same as admin level 0 direct
geo_admin1 0..1
String		 geographical admin level 1, the secondary large demarcation of a nation (nati... direct
geo_admin2 0..1
String		 geographical admin level 2, the third large demarcation of a nation (nation =... direct
geo_admin3 0..1
String		 geographical admin level 3, the third large demarcation of a nation (nation =... direct
lat_lon 0..1
String		 the latitude and longitude of the collection site of the specimen direct
collector_chief_scientist 0..1
String		 can be collection of names separated by a semicolon if multiple people involv... direct
specimen_store_loc 0..1
String		 the specimen store site, address or facility name direct
specimen_collect_device 0..1
String		 the way the specimen was collected, e direct
specimen_type 0..1
String		 what type of specimen this is, e direct
project_name 1
String		 a name of the project under which the specimen is organized direct
specimen_comments *
String		 any additional comments about the specimen direct
travel_out_six_month *
String		 Specification of the countries travelled in the last six months; can include ... direct
plate_info 0..1
PlateInfo		 plate location of where specimen is stored if stored in a plate direct
env_medium 0..1
String		 the environment medium from which the specimen was collected from direct
env_local_scale 0..1
String		 the local environment from which the specimen was collected, e direct
env_broad_scale 0..1
String		 the broad environment from which the specimen was collected, e direct
drug_usage *
String		 Any drug used by subject and the frequency of usage; can include multiple dru... direct

Usages

used by used in type used
PortableMicrohaplotypeObject specimen_info range SpecimenInfo

Identifier and Mapping Information

Schema Source

  • from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type Mapped Value
self portable_microhaplotype_object:SpecimenInfo
native portable_microhaplotype_object:SpecimenInfo

LinkML Source

Direct

name: SpecimenInfo
description: Information on specimen info
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  specimen_name:
    name: specimen_name
    description: an identifier for the specimen, should be unique within this sample
      set
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    identifier: true
    domain_of:
    - SpecimenInfo
    range: string
    required: true
    pattern: ^[A-z-._0-9 ]+$
  specimen_taxon_id:
    name: specimen_taxon_id
    description: the NCBI taxonomy number of the organism in specimen, can list multiple
      if a mixed sample
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: integer
    required: true
    multivalued: true
    inlined: true
    inlined_as_list: true
    pattern: ^[0-9]+$
  host_subject_id:
    name: host_subject_id
    description: an identifier for the individual a specimen was collected from
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: integer
    required: false
    pattern: ^[0-9]+$
  host_taxon_id:
    name: host_taxon_id
    description: the NCBI taxonomy number of the host that the specimen was collected
      from
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: integer
    required: true
    pattern: ^[0-9]+$
  alternate_identifiers:
    name: alternate_identifiers
    description: a list of optional alternative names for the specimens
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
    pattern: ^[A-z-._0-9 ]+$
  host_sex:
    name: host_sex
    description: if specimen is from a person, the sex listed for that person
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9 ]+$
  parasite_density_info:
    name: parasite_density_info
    description: one or more parasite densities in microliters for this specimen
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: ParasiteDensity
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  collection_date:
    name: collection_date
    description: the date of the specimen collection, can be YYYY, YYYY-MM, or YYYY-MM-DD
    examples:
    - value: '1988'
    - value: 1988-06
    - value: '1988-06-26'
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: true
    pattern: (?:\d{4}(?:-(?:0[1-9]|1[0-2])(?:-(?:0[1-9]|[12][0-9]|3[01]))?)?|NA)
  host_age:
    name: host_age
    description: if specimen is from a person, the age in years of the person, can
      be float value so for 3 month old put 0.25
    examples:
    - value: '0.1'
    - value: '1'
    - value: '7'
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: double
    required: false
    pattern: ^\d*\.?\d+$
  collection_country:
    name: collection_country
    description: the name of country collected in, would be the same as admin level
      0
    examples:
    - value: Senegal
    - value: USA
    - value: Japan
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: true
    pattern: ^[A-Za-z0-9 ,._:'–-]+$
  geo_admin1:
    name: geo_admin1
    description: geographical admin level 1, the secondary large demarcation of a
      nation (nation = admin level 0)
    examples:
    - value: State/Province
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
  geo_admin2:
    name: geo_admin2
    description: geographical admin level 2, the third large demarcation of a nation
      (nation = admin level 0)
    examples:
    - value: city
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
  geo_admin3:
    name: geo_admin3
    description: geographical admin level 3, the third large demarcation of a nation
      (nation = admin level 0)
    examples:
    - value: district of a city
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
  lat_lon:
    name: lat_lon
    description: the latitude and longitude of the collection site of the specimen
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[-+]?\d{1,2}(?:\.\d+)?,[-+]?\d{1,3}(?:\.\d+)?$
  collector_chief_scientist:
    name: collector_chief_scientist
    description: can be collection of names separated by a semicolon if multiple people
      involved or can just be the name of the primary person managing the specimen
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$
  specimen_store_loc:
    name: specimen_store_loc
    description: the specimen store site, address or facility name
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  specimen_collect_device:
    name: specimen_collect_device
    description: the way the specimen was collected, e.g. whole blood, dried blood
      spot
    examples:
    - value: whole blood
    - value: dried blood spot
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  specimen_type:
    name: specimen_type
    description: what type of specimen this is, e.g. negative_control, positive_control,
      field_sample
    examples:
    - value: negative_control
    - value: positive_control
    - value: field_sample
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  project_name:
    name: project_name
    description: a name of the project under which the specimen is organized
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: true
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  specimen_comments:
    name: specimen_comments
    description: any additional comments about the specimen
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    multivalued: true
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  travel_out_six_month:
    name: travel_out_six_month
    description: Specification of the countries travelled in the last six months;
      can include multiple travels
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    multivalued: true
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  plate_info:
    name: plate_info
    description: 'plate location of where specimen is stored if stored in a plate '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: PlateInfo
    required: false
  env_medium:
    name: env_medium
    description: the environment medium from which the specimen was collected from
    examples:
    - value: blood
    - value: midgut
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$
  env_local_scale:
    name: env_local_scale
    description: the local environment from which the specimen was collected, e.g.
      jungle, urban, rural
    examples:
    - value: jungle
    - value: urban
    - value: rural
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$
  env_broad_scale:
    name: env_broad_scale
    description: the broad environment from which the specimen was collected, e.g.
      highlands, lowlands, mountainous region
    examples:
    - value: highlands
    - value: lowlands
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$
  drug_usage:
    name: drug_usage
    description: Any drug used by subject and the frequency of usage; can include
      multiple drugs used
    examples:
    - value: Coartem;2/day
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    string_serialization: '{text};{integer}/[year|month|week|day|hour]'
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    multivalued: true
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$

Induced

name: SpecimenInfo
description: Information on specimen info
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  specimen_name:
    name: specimen_name
    description: an identifier for the specimen, should be unique within this sample
      set
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    identifier: true
    alias: specimen_name
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: true
    pattern: ^[A-z-._0-9 ]+$
  specimen_taxon_id:
    name: specimen_taxon_id
    description: the NCBI taxonomy number of the organism in specimen, can list multiple
      if a mixed sample
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: specimen_taxon_id
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: integer
    required: true
    multivalued: true
    inlined: true
    inlined_as_list: true
    pattern: ^[0-9]+$
  host_subject_id:
    name: host_subject_id
    description: an identifier for the individual a specimen was collected from
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: host_subject_id
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: integer
    required: false
    pattern: ^[0-9]+$
  host_taxon_id:
    name: host_taxon_id
    description: the NCBI taxonomy number of the host that the specimen was collected
      from
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: host_taxon_id
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: integer
    required: true
    pattern: ^[0-9]+$
  alternate_identifiers:
    name: alternate_identifiers
    description: a list of optional alternative names for the specimens
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: alternate_identifiers
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
    pattern: ^[A-z-._0-9 ]+$
  host_sex:
    name: host_sex
    description: if specimen is from a person, the sex listed for that person
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: host_sex
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9 ]+$
  parasite_density_info:
    name: parasite_density_info
    description: one or more parasite densities in microliters for this specimen
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: parasite_density_info
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: ParasiteDensity
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  collection_date:
    name: collection_date
    description: the date of the specimen collection, can be YYYY, YYYY-MM, or YYYY-MM-DD
    examples:
    - value: '1988'
    - value: 1988-06
    - value: '1988-06-26'
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: collection_date
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: true
    pattern: (?:\d{4}(?:-(?:0[1-9]|1[0-2])(?:-(?:0[1-9]|[12][0-9]|3[01]))?)?|NA)
  host_age:
    name: host_age
    description: if specimen is from a person, the age in years of the person, can
      be float value so for 3 month old put 0.25
    examples:
    - value: '0.1'
    - value: '1'
    - value: '7'
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: host_age
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: double
    required: false
    pattern: ^\d*\.?\d+$
  collection_country:
    name: collection_country
    description: the name of country collected in, would be the same as admin level
      0
    examples:
    - value: Senegal
    - value: USA
    - value: Japan
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: collection_country
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: true
    pattern: ^[A-Za-z0-9 ,._:'–-]+$
  geo_admin1:
    name: geo_admin1
    description: geographical admin level 1, the secondary large demarcation of a
      nation (nation = admin level 0)
    examples:
    - value: State/Province
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: geo_admin1
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
  geo_admin2:
    name: geo_admin2
    description: geographical admin level 2, the third large demarcation of a nation
      (nation = admin level 0)
    examples:
    - value: city
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: geo_admin2
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
  geo_admin3:
    name: geo_admin3
    description: geographical admin level 3, the third large demarcation of a nation
      (nation = admin level 0)
    examples:
    - value: district of a city
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: geo_admin3
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
  lat_lon:
    name: lat_lon
    description: the latitude and longitude of the collection site of the specimen
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: lat_lon
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[-+]?\d{1,2}(?:\.\d+)?,[-+]?\d{1,3}(?:\.\d+)?$
  collector_chief_scientist:
    name: collector_chief_scientist
    description: can be collection of names separated by a semicolon if multiple people
      involved or can just be the name of the primary person managing the specimen
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: collector_chief_scientist
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$
  specimen_store_loc:
    name: specimen_store_loc
    description: the specimen store site, address or facility name
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: specimen_store_loc
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  specimen_collect_device:
    name: specimen_collect_device
    description: the way the specimen was collected, e.g. whole blood, dried blood
      spot
    examples:
    - value: whole blood
    - value: dried blood spot
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: specimen_collect_device
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  specimen_type:
    name: specimen_type
    description: what type of specimen this is, e.g. negative_control, positive_control,
      field_sample
    examples:
    - value: negative_control
    - value: positive_control
    - value: field_sample
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: specimen_type
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  project_name:
    name: project_name
    description: a name of the project under which the specimen is organized
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: project_name
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: true
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  specimen_comments:
    name: specimen_comments
    description: any additional comments about the specimen
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: specimen_comments
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    multivalued: true
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  travel_out_six_month:
    name: travel_out_six_month
    description: Specification of the countries travelled in the last six months;
      can include multiple travels
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: travel_out_six_month
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    multivalued: true
    pattern: ^[A-z-._0-9\(\),\/\ ]+$
  plate_info:
    name: plate_info
    description: 'plate location of where specimen is stored if stored in a plate '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: plate_info
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: PlateInfo
    required: false
  env_medium:
    name: env_medium
    description: the environment medium from which the specimen was collected from
    examples:
    - value: blood
    - value: midgut
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: env_medium
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$
  env_local_scale:
    name: env_local_scale
    description: the local environment from which the specimen was collected, e.g.
      jungle, urban, rural
    examples:
    - value: jungle
    - value: urban
    - value: rural
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: env_local_scale
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$
  env_broad_scale:
    name: env_broad_scale
    description: the broad environment from which the specimen was collected, e.g.
      highlands, lowlands, mountainous region
    examples:
    - value: highlands
    - value: lowlands
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: env_broad_scale
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$
  drug_usage:
    name: drug_usage
    description: Any drug used by subject and the frequency of usage; can include
      multiple drugs used
    examples:
    - value: Coartem;2/day
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    string_serialization: '{text};{integer}/[year|month|week|day|hour]'
    alias: drug_usage
    owner: SpecimenInfo
    domain_of:
    - SpecimenInfo
    range: string
    required: false
    multivalued: true
    pattern: ^[A-z-._0-9;|\(\),\/\ ]+$