Skip to content

Class: RepresentativeMicrohaplotypesForTarget

a list of the representative sequence for a microhaplotypes, similar to a fast(a/q) format

URI: portable_microhaplotype_object:RepresentativeMicrohaplotypesForTarget

classDiagram class RepresentativeMicrohaplotypesForTarget click RepresentativeMicrohaplotypesForTarget href "../RepresentativeMicrohaplotypesForTarget" RepresentativeMicrohaplotypesForTarget : mhap_location RepresentativeMicrohaplotypesForTarget --> "0..1" GenomicLocation : mhap_location click GenomicLocation href "../GenomicLocation" RepresentativeMicrohaplotypesForTarget : microhaplotypes RepresentativeMicrohaplotypesForTarget --> "1..*" RepresentativeMicrohaplotype : microhaplotypes click RepresentativeMicrohaplotype href "../RepresentativeMicrohaplotype" RepresentativeMicrohaplotypesForTarget : target_id

Slots

Name Cardinality and Range Description Inheritance
target_id 1
Integer		 the index into the target_info list direct
microhaplotypes 1..*
RepresentativeMicrohaplotype		 a list of the microhaplotypes detected for a target direct
mhap_location 0..1
GenomicLocation		 a genomic location that was analyzed for this target info, this allows listin... direct

Usages

used by used in type used
RepresentativeMicrohaplotypes targets range RepresentativeMicrohaplotypesForTarget

Identifier and Mapping Information

Schema Source

  • from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type Mapped Value
self portable_microhaplotype_object:RepresentativeMicrohaplotypesForTarget
native portable_microhaplotype_object:RepresentativeMicrohaplotypesForTarget

LinkML Source

Direct

name: RepresentativeMicrohaplotypesForTarget
description: a list of the representative sequence for a microhaplotypes, similar
  to a fast(a/q) format
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
slots:
- target_id
slot_usage:
  target_id:
    name: target_id
    identifier: true
attributes:
  microhaplotypes:
    name: microhaplotypes
    description: a list of the microhaplotypes detected for a target
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - RepresentativeMicrohaplotypesForTarget
    range: RepresentativeMicrohaplotype
    required: true
    multivalued: true
    inlined_as_list: false
  mhap_location:
    name: mhap_location
    description: 'a genomic location that was analyzed for this target info, this
      allows listing location that may be different from the full target location
      (e.g 1 base in from the full) '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - RepresentativeMicrohaplotypesForTarget
    range: GenomicLocation
    required: false

Induced

name: RepresentativeMicrohaplotypesForTarget
description: a list of the representative sequence for a microhaplotypes, similar
  to a fast(a/q) format
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
slot_usage:
  target_id:
    name: target_id
    identifier: true
attributes:
  microhaplotypes:
    name: microhaplotypes
    description: a list of the microhaplotypes detected for a target
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: microhaplotypes
    owner: RepresentativeMicrohaplotypesForTarget
    domain_of:
    - RepresentativeMicrohaplotypesForTarget
    range: RepresentativeMicrohaplotype
    required: true
    multivalued: true
    inlined_as_list: false
  mhap_location:
    name: mhap_location
    description: 'a genomic location that was analyzed for this target info, this
      allows listing location that may be different from the full target location
      (e.g 1 base in from the full) '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: mhap_location
    owner: RepresentativeMicrohaplotypesForTarget
    domain_of:
    - RepresentativeMicrohaplotypesForTarget
    range: GenomicLocation
    required: false
  target_id:
    name: target_id
    description: the index into the target_info list
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    identifier: true
    alias: target_id
    owner: RepresentativeMicrohaplotypesForTarget
    domain_of:
    - RepresentativeMicrohaplotypesForTarget
    - ReadCountsByStageForTarget
    range: integer
    required: true
    pattern: ^[0-9]+$