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Class: Pseudocigar

information on pseudocigar for a sequence

URI: portable_microhaplotype_object:Pseudocigar

classDiagram class Pseudocigar click Pseudocigar href "../Pseudocigar" Pseudocigar : pseudocigar_generation_description Pseudocigar : pseudocigar_seq Pseudocigar : ref_loc Pseudocigar --> "1" GenomicLocation : ref_loc click GenomicLocation href "../GenomicLocation"

Slots

Name Cardinality and Range Description Inheritance
pseudocigar_seq 1
String		 the pseudocigar itself direct
ref_loc 1
GenomicLocation		 the genomic location the pseudocigar is in reference to direct
pseudocigar_generation_description 0..1
String		 a description of how the pseudocigar information was generated direct

Usages

used by used in type used
RepresentativeMicrohaplotype pseudocigar range Pseudocigar

Identifier and Mapping Information

Schema Source

  • from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type Mapped Value
self portable_microhaplotype_object:Pseudocigar
native portable_microhaplotype_object:Pseudocigar

LinkML Source

Direct

name: Pseudocigar
description: information on pseudocigar for a sequence
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  pseudocigar_seq:
    name: pseudocigar_seq
    description: the pseudocigar itself
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - Pseudocigar
    range: string
    required: true
    pattern: ^[A-z-._0-9]+$
  ref_loc:
    name: ref_loc
    description: the genomic location the pseudocigar is in reference to
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - Pseudocigar
    range: GenomicLocation
    required: true
  pseudocigar_generation_description:
    name: pseudocigar_generation_description
    description: 'a description of how the pseudocigar information was generated '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - Pseudocigar
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$

Induced

name: Pseudocigar
description: information on pseudocigar for a sequence
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  pseudocigar_seq:
    name: pseudocigar_seq
    description: the pseudocigar itself
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: pseudocigar_seq
    owner: Pseudocigar
    domain_of:
    - Pseudocigar
    range: string
    required: true
    pattern: ^[A-z-._0-9]+$
  ref_loc:
    name: ref_loc
    description: the genomic location the pseudocigar is in reference to
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: ref_loc
    owner: Pseudocigar
    domain_of:
    - Pseudocigar
    range: GenomicLocation
    required: true
  pseudocigar_generation_description:
    name: pseudocigar_generation_description
    description: 'a description of how the pseudocigar information was generated '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: pseudocigar_generation_description
    owner: Pseudocigar
    domain_of:
    - Pseudocigar
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$