Class: ParasiteDensity

method and value of determined parasite density

URI: portable_microhaplotype_object:ParasiteDensity

classDiagram class ParasiteDensity click ParasiteDensity href "../ParasiteDensity" ParasiteDensity : date_measured ParasiteDensity : density_method ParasiteDensity : density_method_comments ParasiteDensity : parasite_density

Slots

Name	Cardinality and Range	Description	Inheritance
density_method	1 String	the method of how this density was obtained	direct
parasite_density	1 Double	the density in microliters	direct
date_measured	0..1 String	the date the qpcr was performed, can be YYYY, YYYY-MM, or YYYY-MM-DD	direct
density_method_comments	0..1 String	additional comments about how the density was performed	direct

Usages

used by	used in	type	used
LibrarySampleInfo	qpcr_parasite_density_info	range	ParasiteDensity
SpecimenInfo	microscopy_parasite_density_info	range	ParasiteDensity

Identifier and Mapping Information

Schema Source

from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type	Mapped Value
self	portable_microhaplotype_object:ParasiteDensity
native	portable_microhaplotype_object:ParasiteDensity

LinkML Source

Direct

name: ParasiteDensity
description: method and value of determined parasite density
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  density_method:
    name: density_method
    description: the method of how this density was obtained
    examples:
    - value: qpcr
    - value: microscopy
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - ParasiteDensity
    range: string
    required: true
    pattern: ^[A-z-._0-9 ]+$
  parasite_density:
    name: parasite_density
    description: the density in microliters
    examples:
    - value: '25.0'
    - value: 10e5
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - ParasiteDensity
    range: double
    required: true
    minimum_value: 0
    pattern: ^[-+]?\\d*\\.?\\d+(?:[eE][-+]?\\d+)?$
  date_measured:
    name: date_measured
    description: the date the qpcr was performed, can be YYYY, YYYY-MM, or YYYY-MM-DD
    examples:
    - value: '1988'
    - value: 1988-06
    - value: '1988-06-26'
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - ParasiteDensity
    range: string
    required: false
    pattern: (?:\d{4}(?:-(?:0[1-9]|1[0-2])(?:-(?:0[1-9]|[12][0-9]|3[01]))?)?|NA)
  density_method_comments:
    name: density_method_comments
    description: additional comments about how the density was performed
    examples:
    - value: var-ATS primers used
    - value: John Smith performed microscopy
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - ParasiteDensity
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$

Induced

name: ParasiteDensity
description: method and value of determined parasite density
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  density_method:
    name: density_method
    description: the method of how this density was obtained
    examples:
    - value: qpcr
    - value: microscopy
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: density_method
    owner: ParasiteDensity
    domain_of:
    - ParasiteDensity
    range: string
    required: true
    pattern: ^[A-z-._0-9 ]+$
  parasite_density:
    name: parasite_density
    description: the density in microliters
    examples:
    - value: '25.0'
    - value: 10e5
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: parasite_density
    owner: ParasiteDensity
    domain_of:
    - ParasiteDensity
    range: double
    required: true
    minimum_value: 0
    pattern: ^[-+]?\\d*\\.?\\d+(?:[eE][-+]?\\d+)?$
  date_measured:
    name: date_measured
    description: the date the qpcr was performed, can be YYYY, YYYY-MM, or YYYY-MM-DD
    examples:
    - value: '1988'
    - value: 1988-06
    - value: '1988-06-26'
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: date_measured
    owner: ParasiteDensity
    domain_of:
    - ParasiteDensity
    range: string
    required: false
    pattern: (?:\d{4}(?:-(?:0[1-9]|1[0-2])(?:-(?:0[1-9]|[12][0-9]|3[01]))?)?|NA)
  density_method_comments:
    name: density_method_comments
    description: additional comments about how the density was performed
    examples:
    - value: var-ATS primers used
    - value: John Smith performed microscopy
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: density_method_comments
    owner: ParasiteDensity
    domain_of:
    - ParasiteDensity
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$