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Class: MicrohaplotypesDetected

the microhaplotypes detected in a targeted amplicon analysis

URI: portable_microhaplotype_object:MicrohaplotypesDetected

classDiagram class MicrohaplotypesDetected click MicrohaplotypesDetected href "../MicrohaplotypesDetected" MicrohaplotypesDetected : experiment_samples MicrohaplotypesDetected --> "1..*" MicrohaplotypesForSample : experiment_samples click MicrohaplotypesForSample href "../MicrohaplotypesForSample" MicrohaplotypesDetected : representative_microhaplotype_id MicrohaplotypesDetected : tar_amp_bioinformatics_info_id

Slots

Name Cardinality and Range Description Inheritance
tar_amp_bioinformatics_info_id 1
String		 a unique identifier for this targeted amplicon bioinformatics pipeline run direct
representative_microhaplotype_id 1
String		 an identifier for the representative microhaplotype object collection direct
experiment_samples 1..*
MicrohaplotypesForSample		 a list of the microhaplotypes detected for a sample for various targets direct

Usages

used by used in type used
PortableMicrohaplotypeObject microhaplotypes_detected range MicrohaplotypesDetected

Identifier and Mapping Information

Schema Source

  • from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type Mapped Value
self portable_microhaplotype_object:MicrohaplotypesDetected
native portable_microhaplotype_object:MicrohaplotypesDetected

LinkML Source

Direct

name: MicrohaplotypesDetected
description: the microhaplotypes detected in a targeted amplicon analysis
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
slots:
- tar_amp_bioinformatics_info_id
- representative_microhaplotype_id
attributes:
  experiment_samples:
    name: experiment_samples
    description: 'a list of the microhaplotypes detected for a sample for various
      targets '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - MicrohaplotypesDetected
    range: MicrohaplotypesForSample
    required: true
    multivalued: true
    inlined_as_list: false

Induced

name: MicrohaplotypesDetected
description: the microhaplotypes detected in a targeted amplicon analysis
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  experiment_samples:
    name: experiment_samples
    description: 'a list of the microhaplotypes detected for a sample for various
      targets '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: experiment_samples
    owner: MicrohaplotypesDetected
    domain_of:
    - MicrohaplotypesDetected
    range: MicrohaplotypesForSample
    required: true
    multivalued: true
    inlined_as_list: false
  tar_amp_bioinformatics_info_id:
    name: tar_amp_bioinformatics_info_id
    description: a unique identifier for this targeted amplicon bioinformatics pipeline
      run
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: tar_amp_bioinformatics_info_id
    owner: MicrohaplotypesDetected
    domain_of:
    - MicrohaplotypesDetected
    - DemultiplexedExperimentSamples
    - TarAmpBioinformaticsInfo
    range: string
    required: true
    pattern: ^[A-z-._0-9 ]$
  representative_microhaplotype_id:
    name: representative_microhaplotype_id
    description: an identifier for the representative microhaplotype object collection
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: representative_microhaplotype_id
    owner: MicrohaplotypesDetected
    domain_of:
    - RepresentativeMicrohaplotypeSequences
    - MicrohaplotypesDetected
    range: string
    required: true
    pattern: ^[A-z-._0-9]$