Class: MaskingInfo

information about a subsegment of the sequence that should be masked

URI: portable_microhaplotype_object:MaskingInfo

classDiagram class MaskingInfo click MaskingInfo href "../MaskingInfo" MaskingInfo : masking_generation_description MaskingInfo : replacement_size MaskingInfo : seq_segment_size MaskingInfo : seq_start

Slots

Name	Cardinality and Range	Description	Inheritance
seq_start	1 Integer	the start of the masking	direct
seq_segment_size	1 Integer	the size of the masking	direct
replacement_size	1 Integer	the size of replacement mask	direct
masking_generation_description	0..1 String	a description of how the masking information was generated	direct

Usages

used by	used in	type	used
RepresentativeMicrohaplotype	masking	range	MaskingInfo

Identifier and Mapping Information

Schema Source

from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type	Mapped Value
self	portable_microhaplotype_object:MaskingInfo
native	portable_microhaplotype_object:MaskingInfo

LinkML Source

Direct

name: MaskingInfo
description: information about a subsegment of the sequence that should be masked
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  seq_start:
    name: seq_start
    description: the start of the masking
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - MaskingInfo
    range: integer
    required: true
  seq_segment_size:
    name: seq_segment_size
    description: the size of the masking
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - MaskingInfo
    range: integer
    required: true
  replacement_size:
    name: replacement_size
    description: the size of replacement mask
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - MaskingInfo
    range: integer
    required: true
  masking_generation_description:
    name: masking_generation_description
    description: 'a description of how the masking information was generated '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - MaskingInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$

Induced

name: MaskingInfo
description: information about a subsegment of the sequence that should be masked
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  seq_start:
    name: seq_start
    description: the start of the masking
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: seq_start
    owner: MaskingInfo
    domain_of:
    - MaskingInfo
    range: integer
    required: true
  seq_segment_size:
    name: seq_segment_size
    description: the size of the masking
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: seq_segment_size
    owner: MaskingInfo
    domain_of:
    - MaskingInfo
    range: integer
    required: true
  replacement_size:
    name: replacement_size
    description: the size of replacement mask
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: replacement_size
    owner: MaskingInfo
    domain_of:
    - MaskingInfo
    range: integer
    required: true
  masking_generation_description:
    name: masking_generation_description
    description: 'a description of how the masking information was generated '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: masking_generation_description
    owner: MaskingInfo
    domain_of:
    - MaskingInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9\(\),\/\ ]+$