Class: MarkerOfInterest

A specific genomic location of interest, e.g. drug resistance, or other phenotypical marker

URI: portable_microhaplotype_object:MarkerOfInterest

classDiagram class MarkerOfInterest click MarkerOfInterest href "../MarkerOfInterest" MarkerOfInterest : associations MarkerOfInterest : marker_location MarkerOfInterest --> "1" GenomicLocation : marker_location click GenomicLocation href "../GenomicLocation"

Slots

Name	Cardinality and Range	Description	Inheritance
marker_location	1 GenomicLocation	the genomic location	direct
associations	* String	a list of associations with this marker, e	direct

Usages

used by	used in	type	used
TargetInfo	markers_of_interest	range	MarkerOfInterest

Identifier and Mapping Information

Schema Source

from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type	Mapped Value
self	portable_microhaplotype_object:MarkerOfInterest
native	portable_microhaplotype_object:MarkerOfInterest

LinkML Source

Direct

name: MarkerOfInterest
description: A specific genomic location of interest, e.g. drug resistance, or other
  phenotypical marker
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  marker_location:
    name: marker_location
    description: the genomic location
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - MarkerOfInterest
    range: GenomicLocation
    required: true
    multivalued: false
  associations:
    name: associations
    description: a list of associations with this marker, e.g. SP resistance, etc
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - MarkerOfInterest
    range: string
    required: false
    multivalued: true
    pattern: ^[A-z-._0-9]+$

Induced

name: MarkerOfInterest
description: A specific genomic location of interest, e.g. drug resistance, or other
  phenotypical marker
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  marker_location:
    name: marker_location
    description: the genomic location
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: marker_location
    owner: MarkerOfInterest
    domain_of:
    - MarkerOfInterest
    range: GenomicLocation
    required: true
    multivalued: false
  associations:
    name: associations
    description: a list of associations with this marker, e.g. SP resistance, etc
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: associations
    owner: MarkerOfInterest
    domain_of:
    - MarkerOfInterest
    range: string
    required: false
    multivalued: true
    pattern: ^[A-z-._0-9]+$