Class: ExperimentInfo

Information about a specific amplification and sequencing of a specimen

URI: portable_microhaplotype_object:ExperimentInfo

classDiagram class ExperimentInfo click ExperimentInfo href "../ExperimentInfo" ExperimentInfo : accession ExperimentInfo : experiment_sample_name ExperimentInfo : extraction_plate_info ExperimentInfo --> "0..1" PlateInfo : extraction_plate_info click PlateInfo href "../PlateInfo" ExperimentInfo : panel_id ExperimentInfo : sequencing_info_id ExperimentInfo : sequencing_prep_plate_info ExperimentInfo --> "0..1" PlateInfo : sequencing_prep_plate_info click PlateInfo href "../PlateInfo" ExperimentInfo : specimen_id

Slots

Name	Cardinality and Range	Description	Inheritance
sequencing_info_id	1 Integer	the index into the sequencing_info list	direct
specimen_id	1 Integer	the index into the specimen_info list	direct
panel_id	1 Integer	the index into the panel_info list	direct
accession	0..1 String	ERA/SRA accession number for the sample if it was submitted	direct
experiment_sample_name	1 String	a unique identifier for this sequence/amplification run on a specimen_name	direct
extraction_plate_info	0..1 PlateInfo	plate location of where experiment was extracted	direct
sequencing_prep_plate_info	0..1 PlateInfo	plate location of where experiment was prepared for sequencing	direct

Usages

used by	used in	type	used
PortableMicrohaplotypeObject	experiment_info	range	ExperimentInfo

Identifier and Mapping Information

Schema Source

from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type	Mapped Value
self	portable_microhaplotype_object:ExperimentInfo
native	portable_microhaplotype_object:ExperimentInfo

LinkML Source

Direct

name: ExperimentInfo
description: Information about a specific amplification and sequencing of a specimen
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
slots:
- sequencing_info_id
- specimen_id
- panel_id
slot_usage:
  specimen_id:
    name: specimen_id
    identifier: false
attributes:
  accession:
    name: accession
    description: ERA/SRA accession number for the sample if it was submitted
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - ExperimentInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9]+$
  experiment_sample_name:
    name: experiment_sample_name
    description: a unique identifier for this sequence/amplification run on a specimen_name
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    identifier: true
    domain_of:
    - ExperimentInfo
    range: string
    required: true
    pattern: ^[A-z-._0-9 ]+$
  extraction_plate_info:
    name: extraction_plate_info
    description: plate location of where experiment was extracted
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - ExperimentInfo
    range: PlateInfo
    required: false
  sequencing_prep_plate_info:
    name: sequencing_prep_plate_info
    description: 'plate location of where experiment was prepared for sequencing '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - ExperimentInfo
    range: PlateInfo
    required: false

Induced

name: ExperimentInfo
description: Information about a specific amplification and sequencing of a specimen
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
slot_usage:
  specimen_id:
    name: specimen_id
    identifier: false
attributes:
  accession:
    name: accession
    description: ERA/SRA accession number for the sample if it was submitted
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: accession
    owner: ExperimentInfo
    domain_of:
    - ExperimentInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9]+$
  experiment_sample_name:
    name: experiment_sample_name
    description: a unique identifier for this sequence/amplification run on a specimen_name
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    identifier: true
    alias: experiment_sample_name
    owner: ExperimentInfo
    domain_of:
    - ExperimentInfo
    range: string
    required: true
    pattern: ^[A-z-._0-9 ]+$
  extraction_plate_info:
    name: extraction_plate_info
    description: plate location of where experiment was extracted
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: extraction_plate_info
    owner: ExperimentInfo
    domain_of:
    - ExperimentInfo
    range: PlateInfo
    required: false
  sequencing_prep_plate_info:
    name: sequencing_prep_plate_info
    description: 'plate location of where experiment was prepared for sequencing '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: sequencing_prep_plate_info
    owner: ExperimentInfo
    domain_of:
    - ExperimentInfo
    range: PlateInfo
    required: false
  sequencing_info_id:
    name: sequencing_info_id
    description: the index into the sequencing_info list
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: sequencing_info_id
    owner: ExperimentInfo
    domain_of:
    - ExperimentInfo
    range: integer
    required: true
    pattern: ^[0-9]+$
  specimen_id:
    name: specimen_id
    description: the index into the specimen_info list
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    identifier: false
    alias: specimen_id
    owner: ExperimentInfo
    domain_of:
    - ExperimentInfo
    range: integer
    required: true
    pattern: ^[0-9]+$
  panel_id:
    name: panel_id
    description: the index into the panel_info list
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: panel_id
    owner: ExperimentInfo
    domain_of:
    - ExperimentInfo
    range: integer
    required: true
    pattern: ^[0-9]+$