Class: DetectedMicrohaplotypes

the microhaplotypes detected in a targeted amplicon analysis

URI: portable_microhaplotype_object:DetectedMicrohaplotypes

classDiagram class DetectedMicrohaplotypes click DetectedMicrohaplotypes href "../DetectedMicrohaplotypes" DetectedMicrohaplotypes : bioinformatics_run_id DetectedMicrohaplotypes : library_samples DetectedMicrohaplotypes --> "1..*" DetectedMicrohaplotypesForSample : library_samples click DetectedMicrohaplotypesForSample href "../DetectedMicrohaplotypesForSample"

Slots

Name	Cardinality and Range	Description	Inheritance
bioinformatics_run_id	1 Integer	the index into bioinformatics_run_info list	direct
library_samples	1..* DetectedMicrohaplotypesForSample	a list of the microhaplotypes detected for a sample by targets	direct

Usages

used by	used in	type	used
PortableMicrohaplotypeObject	detected_microhaplotypes	range	DetectedMicrohaplotypes

Identifier and Mapping Information

Schema Source

from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type	Mapped Value
self	portable_microhaplotype_object:DetectedMicrohaplotypes
native	portable_microhaplotype_object:DetectedMicrohaplotypes

LinkML Source

Direct

name: DetectedMicrohaplotypes
description: the microhaplotypes detected in a targeted amplicon analysis
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
slots:
- bioinformatics_run_id
attributes:
  library_samples:
    name: library_samples
    description: 'a list of the microhaplotypes detected for a sample by targets '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - DetectedMicrohaplotypes
    range: DetectedMicrohaplotypesForSample
    required: true
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: DetectedMicrohaplotypes
description: the microhaplotypes detected in a targeted amplicon analysis
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  library_samples:
    name: library_samples
    description: 'a list of the microhaplotypes detected for a sample by targets '
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: library_samples
    owner: DetectedMicrohaplotypes
    domain_of:
    - DetectedMicrohaplotypes
    range: DetectedMicrohaplotypesForSample
    required: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  bioinformatics_run_id:
    name: bioinformatics_run_id
    description: the index into bioinformatics_run_info list
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: bioinformatics_run_id
    owner: DetectedMicrohaplotypes
    domain_of:
    - DetectedMicrohaplotypes
    - ReadCountsByStage
    range: integer
    required: true
    pattern: ^[0-9]+$