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Class: BioinformaticsRunInfo

Information about the pipeline run that generated some of the microhaplotype detected and reads_by_stage

URI: portable_microhaplotype_object:BioinformaticsRunInfo

classDiagram class BioinformaticsRunInfo click BioinformaticsRunInfo href "../BioinformaticsRunInfo" BioinformaticsRunInfo : bioinformatics_methods_id BioinformaticsRunInfo : bioinformatics_run_name BioinformaticsRunInfo : run_date

Slots

Name Cardinality and Range Description Inheritance
bioinformatics_methods_id 1
Integer		 the index into the bioinformatics_methods_info list direct
run_date 1
String		 the date when the run was done, should be YYYY-MM-DD direct
bioinformatics_run_name 0..1
String		 a name to for this run direct

Usages

used by used in type used
PortableMicrohaplotypeObject bioinformatics_run_info range BioinformaticsRunInfo

Identifier and Mapping Information

Schema Source

  • from schema: https://plasmogenepi.github.io/portable-microhaplotype-object

Mappings

Mapping Type Mapped Value
self portable_microhaplotype_object:BioinformaticsRunInfo
native portable_microhaplotype_object:BioinformaticsRunInfo

LinkML Source

Direct

name: BioinformaticsRunInfo
description: Information about the pipeline run that generated some of the microhaplotype
  detected and reads_by_stage
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
slots:
- bioinformatics_methods_id
attributes:
  run_date:
    name: run_date
    description: the date when the run was done, should be YYYY-MM-DD
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - BioinformaticsRunInfo
    range: string
    required: true
    pattern: \d{4}-(?:0[1-9]|1[0-2])(?:-(?:0[1-9]|[12][0-9]|3[01]))?
  bioinformatics_run_name:
    name: bioinformatics_run_name
    description: a name to for this run
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    domain_of:
    - BioinformaticsRunInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9 ]+$

Induced

name: BioinformaticsRunInfo
description: Information about the pipeline run that generated some of the microhaplotype
  detected and reads_by_stage
from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
attributes:
  run_date:
    name: run_date
    description: the date when the run was done, should be YYYY-MM-DD
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: run_date
    owner: BioinformaticsRunInfo
    domain_of:
    - BioinformaticsRunInfo
    range: string
    required: true
    pattern: \d{4}-(?:0[1-9]|1[0-2])(?:-(?:0[1-9]|[12][0-9]|3[01]))?
  bioinformatics_run_name:
    name: bioinformatics_run_name
    description: a name to for this run
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: bioinformatics_run_name
    owner: BioinformaticsRunInfo
    domain_of:
    - BioinformaticsRunInfo
    range: string
    required: false
    pattern: ^[A-z-._0-9 ]+$
  bioinformatics_methods_id:
    name: bioinformatics_methods_id
    description: the index into the bioinformatics_methods_info list
    from_schema: https://plasmogenepi.github.io/portable-microhaplotype-object
    rank: 1000
    alias: bioinformatics_methods_id
    owner: BioinformaticsRunInfo
    domain_of:
    - BioinformaticsRunInfo
    range: integer
    required: true
    pattern: ^[0-9]+$