ReadCountsByStageForTarget

Information on the reads counts at several stages of a pipeline for a target.

Auto-generated R6 class from JSON Schema.

Format

An R6::R6Class() generator object.

Constructor

new(...) supports the following arguments.

• stages: The read counts by each stage.

• target_id: The index into the target_info list.

• extras: Additional properties not explicitly defined in the schema.

Methods

See inline method documentation for initialize(), validate(), to_list(), to_json_list(), and to_json().

Public fields

stages

The read counts by each stage.

target_id

The index into the target_info list.

extras

Additional properties not explicitly defined in the schema.

Methods

Public methods

• ReadCountsByStageForTarget$new()

• ReadCountsByStageForTarget$validate()

• ReadCountsByStageForTarget$to_list()

• ReadCountsByStageForTarget$to_json_list()

• ReadCountsByStageForTarget$to_json()

• ReadCountsByStageForTarget$clone()

---

ReadCountsByStageForTarget$new()

Create a new instance.

Usage

ReadCountsByStageForTarget$new(
  stages = list(),
  target_id = NA_real_,
  extras = list()
)

Arguments

stages

The read counts by each stage.

target_id

The index into the target_info list.

extras

Additional properties not explicitly defined in the schema.

---

ReadCountsByStageForTarget$validate()

Validate the current instance against schema-derived constraints.

Usage

ReadCountsByStageForTarget$validate()

---

ReadCountsByStageForTarget$to_list()

Convert the object to a plain R list using in-memory values.

Usage

ReadCountsByStageForTarget$to_list()

---

ReadCountsByStageForTarget$to_json_list()

Convert the object to a JSON-ready R list.

Usage

ReadCountsByStageForTarget$to_json_list()

---

ReadCountsByStageForTarget$to_json()

Convert the object to a JSON string.

Usage

ReadCountsByStageForTarget$to_json(pretty = FALSE, auto_unbox = TRUE, ...)

Arguments

pretty

Logical; pretty-print the JSON.

auto_unbox

Logical; passed to jsonlite::toJSON().

...

Additional arguments passed to jsonlite::toJSON().

---

ReadCountsByStageForTarget$clone()

The objects of this class are cloneable with this method.

Usage

ReadCountsByStageForTarget$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.