ReadCountsByStage — ReadCountsByStage • pmotoolsr

Information on the reads counts at several stages of a pipeline.

Auto-generated R6 class from JSON Schema.

Format

An R6::R6Class() generator object.

new(...) supports the following arguments.

bioinformatics_run_id: The index into bioinformatics_run_info list.
read_counts_by_library_sample_by_stage: A list by library_sample for the counts at each stage.
extras: Additional properties not explicitly defined in the schema.

See inline method documentation for initialize(), validate(), to_list(), to_json_list(), and to_json().

bioinformatics_run_id: The index into bioinformatics_run_info list.
read_counts_by_library_sample_by_stage: A list by library_sample for the counts at each stage.
extras: Additional properties not explicitly defined in the schema.

Create a new instance.

ReadCountsByStage$new(
  bioinformatics_run_id = NULL,
  read_counts_by_library_sample_by_stage = list(),
  extras = list()
)

bioinformatics_run_id: The index into bioinformatics_run_info list.
read_counts_by_library_sample_by_stage: A list by library_sample for the counts at each stage.
extras: Additional properties not explicitly defined in the schema.

Validate the current instance against schema-derived constraints.

ReadCountsByStage$validate()

Convert the object to a plain R list using in-memory values.

ReadCountsByStage$to_list()

Convert the object to a JSON-ready R list.

ReadCountsByStage$to_json_list()

Convert the object to a JSON string.

ReadCountsByStage$to_json(pretty = FALSE, auto_unbox = TRUE, ...)

The objects of this class are cloneable with this method.

ReadCountsByStage$clone(deep = FALSE)