pmotools.pmo_builder package

Submodules

• pmotools.pmo_builder.json_convert_utils module
  • check_additional_columns_exist()
  • check_null_values()
  • remove_optional_null_values()
• pmotools.pmo_builder.merge_to_pmo module
  • merge_to_pmo()
• pmotools.pmo_builder.metatable_to_pmo module
  • add_parasite_density_info()
  • add_plate_info()
  • check_columns_exist()
  • check_unique_columns()
  • library_sample_info_table_to_pmo()
  • pandas_table_to_json()
  • specimen_info_table_to_pmo()
• pmotools.pmo_builder.mhap_table_to_pmo module
  • build_detected_mhap_dict()
  • create_detected_microhaplotype_dict()
  • create_minimum_library_specimen_dict_from_mhap_table()
  • create_representative_microhaplotype_dict()
  • get_mhap_index_in_representative_mhaps()
  • get_target_id_in_representative_mhaps()
  • mhap_table_to_pmo()
• pmotools.pmo_builder.panel_information_to_pmo module
  • PMOPanelBuilder
    • PMOPanelBuilder.build_panel_info_dict()
    • PMOPanelBuilder.build_target_info_dict()
    • PMOPanelBuilder.check_location_columns()
    • PMOPanelBuilder.check_target_names_are_unique()
    • PMOPanelBuilder.check_unique_target_info()
    • PMOPanelBuilder.summarise_targets_missing_optional_info()
  • check_genome_info()
  • merge_panel_info_dicts()
  • panel_info_table_to_pmo()
• pmotools.pmo_builder.pmo_updater module
  • PMOUpdater
    • PMOUpdater.merge_dicts_by_key()
    • PMOUpdater.update_representative_microhaplotypes_with_protein_variants()
    • PMOUpdater.update_representative_microhaplotypes_with_seq_variants()
    • PMOUpdater.update_specimen_meta_with_traveler_info()
    • PMOUpdater.update_target_info_with_markers_of_interest()
• pmotools.pmo_builder.read_count_by_stage_table_to_pmo module
  • read_count_by_stage_table_to_pmo()

Module contents