Command-line reference

• Convertors To Json
  • text_meta_to_json_meta
  • excel_meta_to_json_meta
  • microhaplotype_table_to_json_file
  • terra_amp_output_to_json
• Extractors From Pmo
  • extract_pmo_with_selected_meta
  • extract_pmo_with_select_specimen_names
  • extract_pmo_with_select_library_sample_names
  • extract_pmo_with_select_targets
  • extract_pmo_with_read_filter
• Working With Multiple Pmos
  • combine_pmos
• Extract Basic Info From Pmo
  • list_library_sample_names_per_specimen_name
  • list_specimen_meta_fields
  • list_bioinformatics_run_names
  • count_specimen_meta
  • count_targets_per_library_sample
  • count_library_samples_per_target
• Validation
  • validate_pmo
• Pmo To Table
  • export_pmo_into_xlsx
  • export_specimen_meta_table
  • export_library_sample_meta_table
  • export_project_info_meta_table
  • export_sequencing_info_meta_table
  • export_specimen_travel_meta_table
  • export_targeted_genomes_meta_table
  • export_target_info_meta_table
  • export_panel_info_meta_table
  • export_bioinformatics_run_info_meta_table
  • export_bioinformatics_methods_info_meta_table
  • extract_allele_table
  • extract_insert_of_panels
  • extract_refseq_of_inserts_of_panels