All modules for which code is available
- pmotools
- pmotools.cli
- pmotools.pmo_builder.json_convert_utils
- pmotools.pmo_builder.merge_to_pmo
- pmotools.pmo_builder.metatable_to_pmo
- pmotools.pmo_builder.mhap_table_to_pmo
- pmotools.pmo_builder.panel_information_to_pmo
- pmotools.pmo_builder.pmo_updater
- pmotools.pmo_builder.read_count_by_stage_table_to_pmo
- pmotools.pmo_engine.pmo_checker
- pmotools.pmo_engine.pmo_exporter
- pmotools.pmo_engine.pmo_processor
- pmotools.pmo_engine.pmo_reader
- pmotools.pmo_engine.pmo_writer
- pmotools.scripts.convertors_to_pmo.excel_meta_to_json_meta
- pmotools.scripts.convertors_to_pmo.microhaplotype_table_to_json_file
- pmotools.scripts.convertors_to_pmo.terra_amp_output_to_json
- pmotools.scripts.convertors_to_pmo.text_meta_to_json_meta
- pmotools.scripts.extract_info_from_pmo.count_library_samples_per_target
- pmotools.scripts.extract_info_from_pmo.count_specimen_meta
- pmotools.scripts.extract_info_from_pmo.count_targets_per_library_sample
- pmotools.scripts.extract_info_from_pmo.list_bioinformatics_run_names
- pmotools.scripts.extract_info_from_pmo.list_library_sample_names_per_specimen_name
- pmotools.scripts.extract_info_from_pmo.list_specimen_meta_fields
- pmotools.scripts.extractors_from_pmo.extract_pmo_with_read_filter
- pmotools.scripts.extractors_from_pmo.extract_pmo_with_select_library_sample_names
- pmotools.scripts.extractors_from_pmo.extract_pmo_with_select_specimen_names
- pmotools.scripts.extractors_from_pmo.extract_pmo_with_select_targets
- pmotools.scripts.extractors_from_pmo.extract_pmo_with_selected_meta
- pmotools.scripts.pmo_to_tables.export_bioinformatics_methods_info_meta_table
- pmotools.scripts.pmo_to_tables.export_bioinformatics_run_info_meta_table
- pmotools.scripts.pmo_to_tables.export_library_sample_meta_table
- pmotools.scripts.pmo_to_tables.export_panel_info_meta_table
- pmotools.scripts.pmo_to_tables.export_pmo_into_xlsx
- pmotools.scripts.pmo_to_tables.export_project_info_meta_table
- pmotools.scripts.pmo_to_tables.export_sequencing_info_meta_table
- pmotools.scripts.pmo_to_tables.export_specimen_meta_table
- pmotools.scripts.pmo_to_tables.export_specimen_travel_meta_table
- pmotools.scripts.pmo_to_tables.export_target_info_meta_table
- pmotools.scripts.pmo_to_tables.export_targeted_genomes_meta_table
- pmotools.scripts.pmo_to_tables.extract_allele_table
- pmotools.scripts.pmo_to_tables.extract_insert_of_panels
- pmotools.scripts.pmo_to_tables.extract_refseq_of_inserts_of_panels
- pmotools.scripts.pmo_utils.combine_pmos
- pmotools.scripts.pmo_utils.validate_pmo
- pmotools.utils.color_text
- pmotools.utils.small_utils