Validate a PMO against the JSON Schema — pmo_validate

Performs full JSON Schema validation using jsonvalidate (ajv engine). The PMO is converted to its on-disk (0-based) JSON form before validation.

Usage

pmo_validate_jsonschema(
  pmo,
  schema = NULL,
  version = NULL,
  engine = c("ajv", "imjv"),
  error = TRUE,
  verbose = TRUE
)

pmo: A PortableMicrohaplotypeObject, parsed PMO list, file path, or JSON string.
schema: Optional schema (file path, JSON string, or parsed list). If NULL, the bundled schema for version is used.
version: Optional schema version to validate against (defaults to pmo_schema_version()). Lets you validate a raw PMO against a different schema version than the one the R6 classes were generated from.
engine: jsonvalidate engine, "ajv" (default) or "imjv".
error: If TRUE (default), raise an error when validation fails; otherwise return the logical result (with an errors attribute).
verbose: Passed to the validator to collect error details.

Invisibly TRUE when valid (or the logical result when error = FALSE).

p <- read_pmo(
  system.file("extdata", "example_full_pmo.json.gz", package = "pmotoolsr"))
pmo_validate_jsonschema(p)