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Convert a raw PMO list into a PortableMicrohaplotypeObject

pmo_list_to_r6.Rd

Wraps a plain nested PMO list (1-based ids, as produced by the filter functions or read_pmo_raw()) into a PortableMicrohaplotypeObject R6 instance. Ids are preserved (the round-trip applies the write offset and the read offset, which cancel out).

Usage

pmo_list_to_r6(pmo_list, validate = TRUE)

Arguments

pmo_list

A PMO list with 1-based id fields.

validate

Logical; validate the resulting object.

Value

A PortableMicrohaplotypeObject instance.

Examples

p <- read_pmo(
  system.file("extdata", "example_full_pmo.json.gz", package = "pmotoolsr"))
filtered <- pmo_filter_by_specimen_ids(p, 1L)
obj <- pmo_list_to_r6(filtered)