Build a name-to-index lookup for PMO entities

These helpers return a named integer vector mapping each entity name to its 1-based position within the corresponding PMO section.

Usage

pmo_index_key_specimen_names(pmo)

pmo_index_key_library_sample_names(pmo)

pmo_index_key_target_names(pmo)

pmo_index_key_panel_names(pmo)

pmo_index_key_bioinformatics_run_names(pmo)

Arguments

pmo

A PortableMicrohaplotypeObject or parsed PMO list.

Value

A named integer vector of 1-based indices keyed by name.

Examples

p <- read_pmo(
  system.file("extdata", "example_full_pmo.json.gz", package = "pmotoolsr"))
head(pmo_index_key_target_names(p))
#> t96 t95 t94 t50 t36 t88 
#>   1   2   3   4   5   6