Filter a PMO down to selected targets — pmo_filter_by_target

Returns a new PMO (as a raw nested list) restricted to the supplied targets, remapping target_info, panel_info, representative_microhaplotypes, detected_microhaplotypes, and read_counts_by_stage to the new target positions.

Usage

pmo_filter_by_target_ids(pmo, target_ids)

Arguments

pmo: A PortableMicrohaplotypeObject or parsed PMO list.
target_ids: Integer vector of 1-based target ids.

Value

A PMO list (write with write_pmo_raw()).

Examples

p <- read_pmo(
  system.file("extdata", "example_full_pmo.json.gz", package = "pmotoolsr"))
sub <- pmo_filter_by_target_ids(p, 1:3)