Count the number of library samples a target is detected in

Usage

pmo_count_library_samples_per_target(
  pmo,
  min_reads = 0,
  collapse_across_runs = FALSE
)

Arguments

pmo: A PortableMicrohaplotypeObject or parsed PMO list.
min_reads: Minimum summed reads for a target to be counted in a sample.
collapse_across_runs: If TRUE, sum counts across bioinformatics runs.

Value

A tibble. If collapse_across_runs = FALSE: columns bioinformatics_run_id, target_name, sample_count. If TRUE: target_name, sample_count.

Examples

p <- read_pmo(
  system.file("extdata", "example_full_pmo.json.gz", package = "pmotoolsr"))
head(pmo_count_library_samples_per_target(p, collapse_across_runs = TRUE))
#> # A tibble: 6 × 2
#>   target_name sample_count
#>   <chr>              <int>
#> 1 t1                     2
#> 2 t10                    2
#> 3 t100                   2
#> 4 t11                    2
#> 5 t12                    2
#> 6 t13                    2